Cube Life: Island Survival Wiki
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The DIV tag is a way of grouping things so that they can be positioned or styled as one thing. It does not make "layers" (although there is a way with CSS to render some elements on top of (superimposed over) other elements). [1] [20:57]

I'm not sure what you mean by "keep all the elements labeled", but each

can have its own ID and CSS classes so it may be referenced in a unique way.

[21:00] If you are looking for a way to make those crafting grids display neatly, then you might want to try using a flexbox. Here is a guide that I find handy: [2]